Photoacoustic Mammoscopy for evaluating screening-detected lesions in the breast
News - Publications
PAMMOTH publications
September 2021
A Helmholtz equation solver using unsupervised learning: Application to transcranial ultrasound
Antonio Stanziola, Simon R. Arridge, Ben T. Cox, Bradley E. Treeby
Journal of Computational Physics, 441, https://doi.org/10.1016/j.jcp.2021.110430
March 2021
Tunable blood oxygenation in the vascular anatomy of a semi-anthropomorphic photoacoustic breast phantom
Maura Dantuma, Saskia Kruitwagen, Javier Ortega-Julia, Rutger P. Pompe van Meerdervoort, Srirang Manohar
Journal of Biomedical Optics, 26/03, https://doi.org/10.1117/1.jbo.26.3.036003
March 2021
Pendant breast immobilization and positioning in photoacoustic tomographic imaging
Sjoukje M. Schoustra, Tim J.P.M. op 't Root, Rutger P. Pompe van Meerdervoort, Laurens Alink, Wiendelt Steenbergen, Srirang Manohar
Photoacoustics, 21, https://doi.org/10.1016/j.pacs.2020.100238
January 2021
Modelling laser ultrasound waveforms: The effect of varying pulse duration and material properties
Srinath Rajagopal, Ben T. Cox
The Journal of the Acoustical Society of America, 149/3, https://doi.org/10.1121/10.0003558
December 2020
Refraction-corrected ray-based inversion for three-dimensional ultrasound tomography of the breast
A Javaherian, F Lucka, B T Cox
Inverse Problems, 36/12, https://doi.org/10.1088/1361-6420/abc0fc
December 2020
100 MHz bandwidth planar laser-generated ultrasound source for hydrophone calibration
Srinath Rajagopal, Ben T. Cox
Ultrasonics, Volume 108, https://doi.org/10.1016/j.ultras.2020.106218
December 2020
Improved forward model for quantitative pulse-echo speed-of-sound imaging
Patrick Stähli, Maju Kuriakose, Martin Frenz, Michael Jaeger
Ultrasonics, Volume 108, December 2020, 106168, https://doi.org/10.1016/j.ultras.2020.106168
October 2020
Bayesian Approach for a Robust Speed-of-Sound Reconstruction Using Pulse-Echo Ultrasound
Patrick Stahli, Martin Frenz, Michael Jaeger
IEEE Transactions on Medical Imaging, 40/2, https://doi.org/10.1109/tmi.2020.3029286
October 2020
Laser-induced synthetic aperture ultrasound imaging
David Thompson, Hindrik Kruit, Damien Gasteau, Srirang Manohar
Journal of Applied Physics, 128/16, https://doi.org/10.1063/5.0023412
October 2020
Deep learning in photoacoustic tomography: current approaches and future directions
Andreas Hauptmann, Ben Cox
Journal of Biomedical Optics, 25/11, https://doi.org/10.1117/1.jbo.25.11.112903
October 2020
Broadband All-Optical Plane-Wave Ultrasound Imaging System Based on a Fabry–Perot Scanner
Khoa Pham, Sacha Noimark, Nam Huynh, Edward Zhang, Filip Kuklis, Jiri Jaros, Adrien Desjardins, Ben Cox, Paul Beard
IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 68/4, https://doi.org/10.1109/tuffc.2020.3028749
September 2020
Progress in biomedical photoacoustic imaging instrumentation toward clinical application
Guenther Paltauf, Robert Nuster, Martin Frenz
Journal of Applied Physics, 128/18, https://doi.org/10.1063/5.0028190
August 2020
Toward accurate quantitative photoacoustic imaging: learning vascular blood oxygen saturation in three dimensions
Ciaran Bench, Andreas Hauptmann, Ben Cox
J. of Biomedical Optics, 25(8), 085003 (2020), https://doi.org/10.1117/1.JBO.25.8.085003
June 2020
Spatially compounded plane wave imaging using a laser-induced ultrasound source
David Thompson, Damien Gasteau, Srirang Manohar
Photoacoustics, Volume 18, 100154, http://dx.doi.org/10.1016/j.pacs.2019.100154
April 2020
Tomographic imaging with an ultrasound and LED-based photoacoustic system
Kalloor Joseph Francis, Yoeri E. Boink, Maura Dantuma, Mithun Kuniyil Ajith Singh, Srirang Manohar, Wiendelt Steenbergen
Biomedical Optics Express, 11/4, https://doi.org/10.1364/boe.384548
March 2020
Quantitative comparison of frequency-domain and delay-and-sum optoacoustic image reconstruction including the effect of coherence factor weighting
Florentin Spadin, Michael Jaeger, Robert Nuster, Pavel Subochev, Martin Frenz
Photoacoustics, Volume 17, 100149, https://doi.org/10.1016/j.pacs.2019.100149
January 2020
A Partially-Learned Algorithm for Joint Photo-acoustic Reconstruction and Segmentation
Marta Cudova, Bradley E Treeby, Jiří Jaroš
IEEE Transactions on Medical Imaging, vol. 39, no. 1, pp. 129-139, DOI:10.1109/TMI.2019.2922026
January 2020
Experimental Validation of k-Wave: Nonlinear Wave Propagation in Layered, Absorbing Fluid Media
Eleanor Martin, Jiri Jaros, Bradley E. Treeby
IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, Volume 67, Issue 1, https://doi.org/10.1109/TUFFC.2019.2941795
December 2019
Estimating blood oxygenation from photoacoustic images: can a simple linear spectroscopic inversion ever work?
Roman Hochuli, Lu An, Paul C. Beard, Benjamin T. Cox
J. of Biomedical Optics 24(12), 24(12) 121914, https://doi.org/10.1117/1.JBO.24.12.121914
December 2019
Current and future trends in photoacoustic breast imaging
Srirang Manohar, Maura Dantuma
Photoacoustics, Volume 16, 100134, http://dx.doi.org/10.1016/j.pacs.2019.04.004
November 2019
Adaptive Execution Planning in Biomedical Workflow Management Systems
Marta Jaros, Bradley E. Treeby, Jiri Jaros
SC19: The International Conference for High Performance Computing, Networking, Storage, and Analysis
November 2019
Advancements in Ultrasound Simulations Enabled by High-Bandwidth GPU Interconnects
Filip Vaverka, Bradley E. Treeby, Jiri Jaros
SC19: The International Conference for High Performance Computing, Networking, Storage, and Analysis
October 2019
Diffraction-limited spatial resolution using synthetic focus time-of-flight ultrasound tomography
Michael Jaeger, Tobias Schweizer, Cyril Etter, Patrick Stahli, Martin Frenz
2019 IEEE International Ultrasonics Symposium (IUS), https://doi.org/10.1109/ULTSYM.2019.8925624
October 2019
Twente Photoacoustic Mammoscope 2: system overview and three-dimensional vascular network images in healthy breasts
Sjoukje M. Schoustra, Daniele Piras, Roeland Huijink, Tim J. P. M. op ‘t Root, Laurens Alink, Wouter Muller Kobold, Wiendelt Steenbergen, Srirang Manohar
Journal of Biomedical Optics, 24(12), 121909 (2019), https://doi.org/10.1117/1.JBO.24.12.121909
October 2019
A semi-anthropomorphic breast phantom with tunable blood oxygenation levels for use in quantitative photoacoustics
Maura Dantuma, Javier Ortega Julia, Srirang Manohar
TENCON 2019 - 2019 IEEE Region 10 Conference (TENCON), pages 114-117
September 2019
Single-pixel camera photoacoustic tomography
Nam Huynh, Felix Lucka, Edward Z. Zhang, Marta M. Betcke, Simon R. Arridge, Paul C. Beard, Benjamin T. Cox
J. of Biomedical Optics 24(12), 121907, https://doi.org/10.1117/1.JBO.24.12.121907
July 2019
Representing arbitrary acoustic source and sensor distributions in Fourier collocation methods
Elliott S. Wise, B. T. Cox, Jiri Jaros, Bradley E. Treeby
The Journal of the Acoustical Society of America 146, 278 (2019); https://doi.org/10.1121/1.5116132
July 2019
Laser-induced ultrasound transmitters for 3D photoacoustic and ultrasound tomography
Damien Gasteau, David Thompson, Srirang Manohar
Proc. SPIE 11077, Opto-Acoustic Methods and Applications in Biophotonics IV, 1107716 (19 July 2019), page 41
June 2019
Evaluation of the Suitability of Intel Xeon Phi Clusters for the Simulation of Ultrasound Wave Propagation Using Pseudospectral Methods
Filip Vaverka, Bradley E. Treeby, Jiri Jaros
Computational Science – ICCS 2019 - 19th International Conference, Faro, Portugal, June 12–14, 2019, Proceedings, Part III, pp. 577-590, https://doi.org/10.1007/978-3-030-22744-9_45
March 2019
Robustness of a partially learned photoacoustic reconstruction algorithm
Yoeri Boink, Christoph Brune, Srirang Manohar
Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781D (6 March 2019), page 47
March 2019
Breast tumor appearances in photoacoustic tomography from fine 3D optical-acoustic simulations (Conference Presentation)
Maura Dantuma, Felix Lucka, Jiri Jaros, Bradley E. Teeby, Ben T. Cox, Srirang Manohar
Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781I (4 March 2019), page 52
March 2019
International Photoacoustic Standardisation Consortium (IPASC): overview (Conference Presentation)
Sarah Bohndiek, Joanna Brunker, Janek Gröhl, Lina Hacker, James Joseph, William C. Vogt, Paolo Armanetti, Hisham Assi, Jeffrey C. Bamber, Paul C. Beard, Thomas Berer, Richard Bouchard, Kimberly A. Briggman, Lucia Cavigli, Bryan Clingman, Ben T. Cox, Adrien E. Desjardins, Andrew Heinmiller, Jeesong Hwang, Eno Hysi, Aoife Ivory, Jithin Jose, Thomas Kirchner, Jan Klohs, Lena Maier-Hein, Efthymios Maneas, Julia Mannheim, Srirang Manohar, Lacey McNally, Luca Menichetti, Steven Miller, Stefan Morscher, Ruiqing Ni, Yoko Okamura, Malini C. Olivo, Marty Pagel, Geoff Parker, Anna Pelagotti, Antonio Pifferi, Srinath Rajagopal, Fulvio Ratto, Daniel Razansky, Lisa M. Richards, Avihai Ron, Mithun Kuniyil Ajith Singh, Maximillian Waldner, Kun Wang, Lihong V. Wang, Wenfeng Xia, Bajram Zeqiri
Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781N (4 March 2019), page 57
March 2019
Plane wave and synthetic transmit aperture echography using laser-induced ultrasound (Conference Presentation)
David Thompson, Libertario Demi, Erik Kruit, Damien Gasteau, Marieke Olsman, Srirang Manohar
Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781A (4 March 2019), page 44
February 2019
A 3D semi-anthropomorphic photoacoustic breast phantom
Maura Dantuma, Rianne van Dommelen, Srirang Manohar
Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781P (27 February 2019), page 59
February 2019
The Twente Photoacoustic Mammoscope 2: 3D vascular network visualization
Sjoukje M. Schoustra, Roeland Huijink, Laurens Alink, Tim J. P. M. op 't Root, Daan Sprünken, Daniele Piras, Wouter F. Muller Kobold, Caroline A. H. Klazen, Margreet C. van der Schaaf, Frank M. van den Engh, Wiendelt Steenbergen, Srirang Manohar
Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 1087813 (27 February 2019), page 37
February 2019
Forward model for quantitative pulse-echo speed-of-sound imaging
Stähli, Patrick; Kuriakose, Maju; Frenz, Martin; Jaeger, Michael
Cornell University, Ithaca, New York, http://arxiv.org/abs/1902.10639
2019
Semi-anthropomorphic photoacoustic breast phantom
Maura Dantuma, Rianne van Dommelen, Srirang Manohar
Biomedical Optics Express Vol. 10, Issue 11, pp. 5921-5939 (2019), https://doi.org/10.1364/BOE.10.005921
October 2018
Effect of Backing on Carbon-Polymer Nanocomposite Sources for Laser Generation of Broadband Ultrasound Pulses
S. Rajagopal, B. E. Treeby and B. T. Cox
2018 IEEE International Ultrasonics Symposium (IUS), Kobe, 2018, pp. 1-4, https://doi.org/10.1109/ULTSYM.2018.8579784
October 2018
Accurate Time-Varying Sources in K-Space Pseudospectral Time Domain Acoustic Simulations
B. T. Cox and B. E. Treeby
2018 IEEE International Ultrasonics Symposium (IUS), Kobe, 2018, pp. 1-4, https://doi.org/10.1109/ULTSYM.2018.8580206
October 2018
Enhancing Compressed Sensing 4D Photoacoustic Tomography by Simultaneous Motion Estimation
Felix Lucka, Nam Huynh, Marta Betcke, Edward Zhang, Paul Beard, Ben Cox, Simon Arridge
SIAM Journal on Imaging Sciences, Volume 11, Issue 4, 2224–2253, https://doi.org/10.1137/18M1170066
September 2018
Real-time cardiovascular MR with spatio-temporal artifact suppression using deep learning–proof of concept in congenital heart disease
Andreas Hauptmann, Simon Arridge, Felix Lucka, Vivek Muthurangu, Jennifer A. Steeden
Magnetic Resonance in Medicine, Volume 81, Issue 2, pages 1143-1156, https://doi.org/10.1002/mrm.27480
August 2018
Equivalent-Source Acoustic Holography for Projecting Measured Ultrasound Fields Through Complex Media
B. Treeby, F. Lucka, E. Martin and B. T. Cox
IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, vol. 65, no. 10, pp. 1857-1864, https://doi.org/10.1109/TUFFC.2018.2861895
August 2018
Laser generated ultrasound sources using carbon-polymer nanocomposites for high frequency metrology
Srinath Rajagopal, Toby Sainsbury, Bradley E. Treeby, Ben T. Cox
The Journal of the Acoustical Society of America > Volume 144, Issue 2, pages 584-597, https://doi.org/10.1121/1.5048413
August 2018
Spectral correction for handheld optoacoustic imaging by means of near-infrared optical tomography in reflection mode
Leonie Ulrich, Linda Ahnen, Hidayet Günhan Akarçay, Salvador Sánchez Majos, Michael Jaeger, Kai Gerrit Held, Martin Wolf, Martin Frenz
Journal of Biophotonics, 12/1, https://doi.org/10.1002/jbio.201800112
July 2018
Design of HIFU treatment plans using an evolutionary strategy
Marta Cudova, Bradley E Treeby, Jiří Jaroš
GECCO '18: Proceedings of the Genetic and Evolutionary Computation Conference CompanionJuly 2018, Pages 1568–1575, https://doi.org/10.1145/3205651.3208268
July 2018
GPU-Accelerated Simulation of Elastic Wave Propagation
K. Kadlubiak, J. Jaros and B. E. Treeby
International Conference on High Performance Computing & Simulation (HPCS), Orleans, 2018, pp. 188-195, https://doi.org/10.1109/HPCS.2018.00044
June 2018
Model-Based Learning for Accelerated, Limited-View 3-D Photoacoustic Tomography
Andreas Hauptmann, Felix Lucka, Marta Betcke, Nam Huynh, Jonas Adler, Ben Cox, Paul Beard, Sebastien Ourselin, Simon Arridge
IEEE Transactions on Medical Imaging, vol. 37, no. 6, pp. 1382-1393, DOI:10.1109/TMI.2018.2820382
2018
A framework for directional and higher-order reconstruction in photoacoustic tomography.
Boink, Y. E., Lagerwerf, M. J., Steenbergen, W., van Gils, S. A., Manohar, S., & Brune, C.
Physics in Medicine & Biology, 63(4), 045018; DOI:10.1088/1361-6560/aaaa4a
June 2018
A hierarchical Bayesian perspective on majorization-minimization for non-convex sparse regression: application to M/EEG source imaging
Yousra Bekhti, Felix Lucka, Joseph Salmon, Alexandre Gramfort
Inverse Problems, 34/8, DOI:10.1088/1361-6420/aac9b3
June 2018
Efficient Low-Resource Compression of HIFU Data.
Kleparnik Petr, Barina David, Zemcik Pavel and Jaros Jiri
Information. Basel: MDPI, 2018, vol. 9, no. 7, pp. 1-14. ISSN 2078-2489; DOI:10.3390/info9070155
February 2018
A framework for directional and higher-order reconstruction in photoacoustic tomography
Yoeri E Boink, Marinus J Lagerwerf, Wiendelt Steenbergen, Stephan A van Gils, Srirang Manohar, Christoph Brune
Physics in Medicine & Biology, 63/4, 045018, http://dx.doi.org/10.1088/1361-6560/aaaa4a
January 2018
Rapid calculation of acoustic fields from arbitrary continuous-wave sources
Bradley E. Treeby, Jakub Budisky, Elliott S. Wise, Jiri Jaros, and B. T. Cox
The Journal of the Acoustical Society of America, Volume 143, Issue 1, https://doi.org/10.1121/1.5021245
2017
Running Large-Scale Ultrasound Simulations on 256 Salomon Nodes
Filip Vaverka; Bradley E. Treeby; Jiri Jaros
1st Users Conference of IT4Innovations, https://sc17.supercomputing.org/SC17%20Archive/tech_poster/poster_files/post255s2-file3.pdf
December 2017
Efficient Lossy Compression of Ultrasound Data.
Kleparnik Petr, Zemcik Pavel and Jaros Jiri
In: 2017 IEEE International Symposium on Signal Processing and Information Technology (ISSPIT). Bilbao: Institute of Electrical and Electronics Engineers, 2017, pp. 232-237. ISBN 978-1-5386-4662-5; DOI:10.1109/ISSPIT.2017.8388647
November 2017
Running Large-Scale Ultrasound Simulations on Piz Daint with 512 Pascal GPUs
Filip Vaverka; Bradley E. Treeby; Jiri Jaros
The International Conference for High Performance Computing, Networking, Storage and Analysis (Supercomputing 2017)
October 2017
Framework for Planning, Executing and Monitoring Cooperating Computations
Marta Cudova; Jiri Jaros
1st Users Conference of IT4Innovations, Ostrava
A Helmholtz equation solver using unsupervised learning: Application to transcranial ultrasound
Antonio Stanziola, Simon R. Arridge, Ben T. Cox, Bradley E. Treeby
Journal of Computational Physics, 441, https://doi.org/10.1016/j.jcp.2021.110430
March 2021
Tunable blood oxygenation in the vascular anatomy of a semi-anthropomorphic photoacoustic breast phantom
Maura Dantuma, Saskia Kruitwagen, Javier Ortega-Julia, Rutger P. Pompe van Meerdervoort, Srirang Manohar
Journal of Biomedical Optics, 26/03, https://doi.org/10.1117/1.jbo.26.3.036003
March 2021
Pendant breast immobilization and positioning in photoacoustic tomographic imaging
Sjoukje M. Schoustra, Tim J.P.M. op 't Root, Rutger P. Pompe van Meerdervoort, Laurens Alink, Wiendelt Steenbergen, Srirang Manohar
Photoacoustics, 21, https://doi.org/10.1016/j.pacs.2020.100238
January 2021
Modelling laser ultrasound waveforms: The effect of varying pulse duration and material properties
Srinath Rajagopal, Ben T. Cox
The Journal of the Acoustical Society of America, 149/3, https://doi.org/10.1121/10.0003558
December 2020
Refraction-corrected ray-based inversion for three-dimensional ultrasound tomography of the breast
A Javaherian, F Lucka, B T Cox
Inverse Problems, 36/12, https://doi.org/10.1088/1361-6420/abc0fc
December 2020
100 MHz bandwidth planar laser-generated ultrasound source for hydrophone calibration
Srinath Rajagopal, Ben T. Cox
Ultrasonics, Volume 108, https://doi.org/10.1016/j.ultras.2020.106218
December 2020
Improved forward model for quantitative pulse-echo speed-of-sound imaging
Patrick Stähli, Maju Kuriakose, Martin Frenz, Michael Jaeger
Ultrasonics, Volume 108, December 2020, 106168, https://doi.org/10.1016/j.ultras.2020.106168
October 2020
Bayesian Approach for a Robust Speed-of-Sound Reconstruction Using Pulse-Echo Ultrasound
Patrick Stahli, Martin Frenz, Michael Jaeger
IEEE Transactions on Medical Imaging, 40/2, https://doi.org/10.1109/tmi.2020.3029286
October 2020
Laser-induced synthetic aperture ultrasound imaging
David Thompson, Hindrik Kruit, Damien Gasteau, Srirang Manohar
Journal of Applied Physics, 128/16, https://doi.org/10.1063/5.0023412
October 2020
Deep learning in photoacoustic tomography: current approaches and future directions
Andreas Hauptmann, Ben Cox
Journal of Biomedical Optics, 25/11, https://doi.org/10.1117/1.jbo.25.11.112903
October 2020
Broadband All-Optical Plane-Wave Ultrasound Imaging System Based on a Fabry–Perot Scanner
Khoa Pham, Sacha Noimark, Nam Huynh, Edward Zhang, Filip Kuklis, Jiri Jaros, Adrien Desjardins, Ben Cox, Paul Beard
IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 68/4, https://doi.org/10.1109/tuffc.2020.3028749
September 2020
Progress in biomedical photoacoustic imaging instrumentation toward clinical application
Guenther Paltauf, Robert Nuster, Martin Frenz
Journal of Applied Physics, 128/18, https://doi.org/10.1063/5.0028190
August 2020
Toward accurate quantitative photoacoustic imaging: learning vascular blood oxygen saturation in three dimensions
Ciaran Bench, Andreas Hauptmann, Ben Cox
J. of Biomedical Optics, 25(8), 085003 (2020), https://doi.org/10.1117/1.JBO.25.8.085003
June 2020
Spatially compounded plane wave imaging using a laser-induced ultrasound source
David Thompson, Damien Gasteau, Srirang Manohar
Photoacoustics, Volume 18, 100154, http://dx.doi.org/10.1016/j.pacs.2019.100154
April 2020
Tomographic imaging with an ultrasound and LED-based photoacoustic system
Kalloor Joseph Francis, Yoeri E. Boink, Maura Dantuma, Mithun Kuniyil Ajith Singh, Srirang Manohar, Wiendelt Steenbergen
Biomedical Optics Express, 11/4, https://doi.org/10.1364/boe.384548
March 2020
Quantitative comparison of frequency-domain and delay-and-sum optoacoustic image reconstruction including the effect of coherence factor weighting
Florentin Spadin, Michael Jaeger, Robert Nuster, Pavel Subochev, Martin Frenz
Photoacoustics, Volume 17, 100149, https://doi.org/10.1016/j.pacs.2019.100149
January 2020
A Partially-Learned Algorithm for Joint Photo-acoustic Reconstruction and Segmentation
Marta Cudova, Bradley E Treeby, Jiří Jaroš
IEEE Transactions on Medical Imaging, vol. 39, no. 1, pp. 129-139, DOI:10.1109/TMI.2019.2922026
January 2020
Experimental Validation of k-Wave: Nonlinear Wave Propagation in Layered, Absorbing Fluid Media
Eleanor Martin, Jiri Jaros, Bradley E. Treeby
IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, Volume 67, Issue 1, https://doi.org/10.1109/TUFFC.2019.2941795
December 2019
Estimating blood oxygenation from photoacoustic images: can a simple linear spectroscopic inversion ever work?
Roman Hochuli, Lu An, Paul C. Beard, Benjamin T. Cox
J. of Biomedical Optics 24(12), 24(12) 121914, https://doi.org/10.1117/1.JBO.24.12.121914
December 2019
Current and future trends in photoacoustic breast imaging
Srirang Manohar, Maura Dantuma
Photoacoustics, Volume 16, 100134, http://dx.doi.org/10.1016/j.pacs.2019.04.004
November 2019
Adaptive Execution Planning in Biomedical Workflow Management Systems
Marta Jaros, Bradley E. Treeby, Jiri Jaros
SC19: The International Conference for High Performance Computing, Networking, Storage, and Analysis
November 2019
Advancements in Ultrasound Simulations Enabled by High-Bandwidth GPU Interconnects
Filip Vaverka, Bradley E. Treeby, Jiri Jaros
SC19: The International Conference for High Performance Computing, Networking, Storage, and Analysis
October 2019
Diffraction-limited spatial resolution using synthetic focus time-of-flight ultrasound tomography
Michael Jaeger, Tobias Schweizer, Cyril Etter, Patrick Stahli, Martin Frenz
2019 IEEE International Ultrasonics Symposium (IUS), https://doi.org/10.1109/ULTSYM.2019.8925624
October 2019
Twente Photoacoustic Mammoscope 2: system overview and three-dimensional vascular network images in healthy breasts
Sjoukje M. Schoustra, Daniele Piras, Roeland Huijink, Tim J. P. M. op ‘t Root, Laurens Alink, Wouter Muller Kobold, Wiendelt Steenbergen, Srirang Manohar
Journal of Biomedical Optics, 24(12), 121909 (2019), https://doi.org/10.1117/1.JBO.24.12.121909
October 2019
A semi-anthropomorphic breast phantom with tunable blood oxygenation levels for use in quantitative photoacoustics
Maura Dantuma, Javier Ortega Julia, Srirang Manohar
TENCON 2019 - 2019 IEEE Region 10 Conference (TENCON), pages 114-117
September 2019
Single-pixel camera photoacoustic tomography
Nam Huynh, Felix Lucka, Edward Z. Zhang, Marta M. Betcke, Simon R. Arridge, Paul C. Beard, Benjamin T. Cox
J. of Biomedical Optics 24(12), 121907, https://doi.org/10.1117/1.JBO.24.12.121907
July 2019
Representing arbitrary acoustic source and sensor distributions in Fourier collocation methods
Elliott S. Wise, B. T. Cox, Jiri Jaros, Bradley E. Treeby
The Journal of the Acoustical Society of America 146, 278 (2019); https://doi.org/10.1121/1.5116132
July 2019
Laser-induced ultrasound transmitters for 3D photoacoustic and ultrasound tomography
Damien Gasteau, David Thompson, Srirang Manohar
Proc. SPIE 11077, Opto-Acoustic Methods and Applications in Biophotonics IV, 1107716 (19 July 2019), page 41
June 2019
Evaluation of the Suitability of Intel Xeon Phi Clusters for the Simulation of Ultrasound Wave Propagation Using Pseudospectral Methods
Filip Vaverka, Bradley E. Treeby, Jiri Jaros
Computational Science – ICCS 2019 - 19th International Conference, Faro, Portugal, June 12–14, 2019, Proceedings, Part III, pp. 577-590, https://doi.org/10.1007/978-3-030-22744-9_45
March 2019
Robustness of a partially learned photoacoustic reconstruction algorithm
Yoeri Boink, Christoph Brune, Srirang Manohar
Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781D (6 March 2019), page 47
March 2019
Breast tumor appearances in photoacoustic tomography from fine 3D optical-acoustic simulations (Conference Presentation)
Maura Dantuma, Felix Lucka, Jiri Jaros, Bradley E. Teeby, Ben T. Cox, Srirang Manohar
Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781I (4 March 2019), page 52
March 2019
International Photoacoustic Standardisation Consortium (IPASC): overview (Conference Presentation)
Sarah Bohndiek, Joanna Brunker, Janek Gröhl, Lina Hacker, James Joseph, William C. Vogt, Paolo Armanetti, Hisham Assi, Jeffrey C. Bamber, Paul C. Beard, Thomas Berer, Richard Bouchard, Kimberly A. Briggman, Lucia Cavigli, Bryan Clingman, Ben T. Cox, Adrien E. Desjardins, Andrew Heinmiller, Jeesong Hwang, Eno Hysi, Aoife Ivory, Jithin Jose, Thomas Kirchner, Jan Klohs, Lena Maier-Hein, Efthymios Maneas, Julia Mannheim, Srirang Manohar, Lacey McNally, Luca Menichetti, Steven Miller, Stefan Morscher, Ruiqing Ni, Yoko Okamura, Malini C. Olivo, Marty Pagel, Geoff Parker, Anna Pelagotti, Antonio Pifferi, Srinath Rajagopal, Fulvio Ratto, Daniel Razansky, Lisa M. Richards, Avihai Ron, Mithun Kuniyil Ajith Singh, Maximillian Waldner, Kun Wang, Lihong V. Wang, Wenfeng Xia, Bajram Zeqiri
Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781N (4 March 2019), page 57
March 2019
Plane wave and synthetic transmit aperture echography using laser-induced ultrasound (Conference Presentation)
David Thompson, Libertario Demi, Erik Kruit, Damien Gasteau, Marieke Olsman, Srirang Manohar
Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781A (4 March 2019), page 44
February 2019
A 3D semi-anthropomorphic photoacoustic breast phantom
Maura Dantuma, Rianne van Dommelen, Srirang Manohar
Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 108781P (27 February 2019), page 59
February 2019
The Twente Photoacoustic Mammoscope 2: 3D vascular network visualization
Sjoukje M. Schoustra, Roeland Huijink, Laurens Alink, Tim J. P. M. op 't Root, Daan Sprünken, Daniele Piras, Wouter F. Muller Kobold, Caroline A. H. Klazen, Margreet C. van der Schaaf, Frank M. van den Engh, Wiendelt Steenbergen, Srirang Manohar
Proc. SPIE 10878, Photons Plus Ultrasound: Imaging and Sensing 2019, 1087813 (27 February 2019), page 37
February 2019
Forward model for quantitative pulse-echo speed-of-sound imaging
Stähli, Patrick; Kuriakose, Maju; Frenz, Martin; Jaeger, Michael
Cornell University, Ithaca, New York, http://arxiv.org/abs/1902.10639
2019
Semi-anthropomorphic photoacoustic breast phantom
Maura Dantuma, Rianne van Dommelen, Srirang Manohar
Biomedical Optics Express Vol. 10, Issue 11, pp. 5921-5939 (2019), https://doi.org/10.1364/BOE.10.005921
October 2018
Effect of Backing on Carbon-Polymer Nanocomposite Sources for Laser Generation of Broadband Ultrasound Pulses
S. Rajagopal, B. E. Treeby and B. T. Cox
2018 IEEE International Ultrasonics Symposium (IUS), Kobe, 2018, pp. 1-4, https://doi.org/10.1109/ULTSYM.2018.8579784
October 2018
Accurate Time-Varying Sources in K-Space Pseudospectral Time Domain Acoustic Simulations
B. T. Cox and B. E. Treeby
2018 IEEE International Ultrasonics Symposium (IUS), Kobe, 2018, pp. 1-4, https://doi.org/10.1109/ULTSYM.2018.8580206
October 2018
Enhancing Compressed Sensing 4D Photoacoustic Tomography by Simultaneous Motion Estimation
Felix Lucka, Nam Huynh, Marta Betcke, Edward Zhang, Paul Beard, Ben Cox, Simon Arridge
SIAM Journal on Imaging Sciences, Volume 11, Issue 4, 2224–2253, https://doi.org/10.1137/18M1170066
September 2018
Real-time cardiovascular MR with spatio-temporal artifact suppression using deep learning–proof of concept in congenital heart disease
Andreas Hauptmann, Simon Arridge, Felix Lucka, Vivek Muthurangu, Jennifer A. Steeden
Magnetic Resonance in Medicine, Volume 81, Issue 2, pages 1143-1156, https://doi.org/10.1002/mrm.27480
August 2018
Equivalent-Source Acoustic Holography for Projecting Measured Ultrasound Fields Through Complex Media
B. Treeby, F. Lucka, E. Martin and B. T. Cox
IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, vol. 65, no. 10, pp. 1857-1864, https://doi.org/10.1109/TUFFC.2018.2861895
August 2018
Laser generated ultrasound sources using carbon-polymer nanocomposites for high frequency metrology
Srinath Rajagopal, Toby Sainsbury, Bradley E. Treeby, Ben T. Cox
The Journal of the Acoustical Society of America > Volume 144, Issue 2, pages 584-597, https://doi.org/10.1121/1.5048413
August 2018
Spectral correction for handheld optoacoustic imaging by means of near-infrared optical tomography in reflection mode
Leonie Ulrich, Linda Ahnen, Hidayet Günhan Akarçay, Salvador Sánchez Majos, Michael Jaeger, Kai Gerrit Held, Martin Wolf, Martin Frenz
Journal of Biophotonics, 12/1, https://doi.org/10.1002/jbio.201800112
July 2018
Design of HIFU treatment plans using an evolutionary strategy
Marta Cudova, Bradley E Treeby, Jiří Jaroš
GECCO '18: Proceedings of the Genetic and Evolutionary Computation Conference CompanionJuly 2018, Pages 1568–1575, https://doi.org/10.1145/3205651.3208268
July 2018
GPU-Accelerated Simulation of Elastic Wave Propagation
K. Kadlubiak, J. Jaros and B. E. Treeby
International Conference on High Performance Computing & Simulation (HPCS), Orleans, 2018, pp. 188-195, https://doi.org/10.1109/HPCS.2018.00044
June 2018
Model-Based Learning for Accelerated, Limited-View 3-D Photoacoustic Tomography
Andreas Hauptmann, Felix Lucka, Marta Betcke, Nam Huynh, Jonas Adler, Ben Cox, Paul Beard, Sebastien Ourselin, Simon Arridge
IEEE Transactions on Medical Imaging, vol. 37, no. 6, pp. 1382-1393, DOI:10.1109/TMI.2018.2820382
2018
A framework for directional and higher-order reconstruction in photoacoustic tomography.
Boink, Y. E., Lagerwerf, M. J., Steenbergen, W., van Gils, S. A., Manohar, S., & Brune, C.
Physics in Medicine & Biology, 63(4), 045018; DOI:10.1088/1361-6560/aaaa4a
June 2018
A hierarchical Bayesian perspective on majorization-minimization for non-convex sparse regression: application to M/EEG source imaging
Yousra Bekhti, Felix Lucka, Joseph Salmon, Alexandre Gramfort
Inverse Problems, 34/8, DOI:10.1088/1361-6420/aac9b3
June 2018
Efficient Low-Resource Compression of HIFU Data.
Kleparnik Petr, Barina David, Zemcik Pavel and Jaros Jiri
Information. Basel: MDPI, 2018, vol. 9, no. 7, pp. 1-14. ISSN 2078-2489; DOI:10.3390/info9070155
February 2018
A framework for directional and higher-order reconstruction in photoacoustic tomography
Yoeri E Boink, Marinus J Lagerwerf, Wiendelt Steenbergen, Stephan A van Gils, Srirang Manohar, Christoph Brune
Physics in Medicine & Biology, 63/4, 045018, http://dx.doi.org/10.1088/1361-6560/aaaa4a
January 2018
Rapid calculation of acoustic fields from arbitrary continuous-wave sources
Bradley E. Treeby, Jakub Budisky, Elliott S. Wise, Jiri Jaros, and B. T. Cox
The Journal of the Acoustical Society of America, Volume 143, Issue 1, https://doi.org/10.1121/1.5021245
2017
Running Large-Scale Ultrasound Simulations on 256 Salomon Nodes
Filip Vaverka; Bradley E. Treeby; Jiri Jaros
1st Users Conference of IT4Innovations, https://sc17.supercomputing.org/SC17%20Archive/tech_poster/poster_files/post255s2-file3.pdf
December 2017
Efficient Lossy Compression of Ultrasound Data.
Kleparnik Petr, Zemcik Pavel and Jaros Jiri
In: 2017 IEEE International Symposium on Signal Processing and Information Technology (ISSPIT). Bilbao: Institute of Electrical and Electronics Engineers, 2017, pp. 232-237. ISBN 978-1-5386-4662-5; DOI:10.1109/ISSPIT.2017.8388647
November 2017
Running Large-Scale Ultrasound Simulations on Piz Daint with 512 Pascal GPUs
Filip Vaverka; Bradley E. Treeby; Jiri Jaros
The International Conference for High Performance Computing, Networking, Storage and Analysis (Supercomputing 2017)
October 2017
Framework for Planning, Executing and Monitoring Cooperating Computations
Marta Cudova; Jiri Jaros
1st Users Conference of IT4Innovations, Ostrava
Prizes and Honors - PAMMOTH consortium
Best Research Poster Award at the International Supercomputing Conference in Frankfurt, Germany (https://www.isc-hpc.com/) for the poster by Kadlubiak Kristian, Jaros Jiri and Treeby Bradley E. GPU-accelerated Simulation of Elastic Wave Propagation. International Supercomputing Conference, Frankfurt am Main, 2018. ISC is the best European conference on high performance computing and usually ranked #2 in this area worldwide.
Excellent Poster Presentation Award - Signal Frequency Content and Appearance of Tumors in Photoacoustic Breast Tomography: A Simulation by Maura Dantuma, Felix Lucka, Bradley Treeby, Jiri Jaros, Ben Cox, and Srirang Manohar - Ultrasonics 2018, Caparica, Portugal.